Genetic diagrams involving autosomal linkage often predict solely parental type offspring (offspring that have the same combination of characteristics as their parents)
However in reality recombinant offspring (offspring that have a different combination of characteristics to their parents) are often produced
This is due to the crossing over that occurs during meiosis
The crossing over and exchanging of genetic material breaks the linkage between the genes and recombines the characteristics of the parent
The process of crossing-over results in recombinant phenotypes that can differ from the parental phenotype.
The frequency of recombinants within a population will nearly always be less than that of non-recombinants
Crossing over is random and chiasmata form at different locations with each meiotic division
Recombination frequency between two linked genes is greater when genes are further apart on the same chromosome
There are more possible locations for a chiasma to form between the genes
Identifying recombinants using test crosses
Test crosses are often used to determine unknown genotypes
Similarly, they can be used to identify recombinant phenotypes in offspring
An individual is crossed with a homozygous recessive individual (for both traits)
If any of the offspring possess a non-parental phenotype then they are labelled as recombinants
These individuals have new allele combinations due to the process of crossing over during meiosis leading to the exchange of genetic material between chromosomes
Drawing a Punnett square to show dihybrid inheritance of linked genes
A number of sweet pea plants were generated by crossing double-homozygous dominant plants (PL)(PL) with double-homozygous recessive plants (pl)(pl) to produce a 100% heterozygous F1 generation (PL)(pl) as expected
Members of this generation were then interbred to produce the F2 generation
Alleles:
P = purple flowers, dominant to p = red flowers
L = long seeds, dominant to l = round seeds
Possible Gametes Table
F2 Punnet Square Showing Possible Genotypes
According to Mendelian ratios and the Punnett square, the F2 generation should follow the typical 9:3:3:1 ratio
However, in reality, the frequency of recombinant gametes will be much lower than that of parental gametes
This affects the resulting offspring phenotypes, with fewer recombinant phenotypes occurring than expected
Expected vs Predicted Phenotypes Table
Observations
More of the F2 offspring than expected showed the parentalphenotypes
Fewer plants with recombinant phenotypes were produced than the 9:3:3:1 ratio would suggest
The actual ratios found were referred to as 'non-Mendelian' as they didn't follow Mendel’s pattern
However, this was not zero; some recombinants were still being produced
Possible Theories to Explain These Findings
At the time, it was known that many genes were carried on a few chromosomes
The idea that certain genes share the same chromosome was being developed by many scientists
This suggested that genes could be inherited together, not by the law of independent assortment as put forward by Mendel
The idea of linkage of genes was developed to explain the non-Mendelian ratios
The frequency of recombinant phenotypes is lower because crossing over is a random process and the chiasmata do not always form in the same place for each meiotic division
The frequency of recombinant gametes also depends on the closeness of linkage between the two genes
Genes located close together on a chromosome are less likely to be separated by crossing over
So recombinants of those two genes will be less frequent
Thomas Hunt Morgan later provided proof of linkage to explain non-Mendelian ratios in his experimentation with fruit flies (Drosophila melanogaster)
Exam Tip
Remember to distinguish between sex linkage and autosomal linkage. The explanation of non-Mendelian ratios falls into the domain of autosomal linkage for IB.